The Jackson Laboratory
- 144 followers
- Bar Harbor, ME | Farmington, CT | Sacramento, CA
- https://www.jax.org/
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zarrdataset
zarrdataset PublicA dataset for loading zarr files to be used in machine learning training pipelines
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JAXBD2K-ShortCourse
JAXBD2K-ShortCourse PublicThis repository contains course materials from JAX-BD2K workshop.
Repositories
- sci-image-visualizer Public
Browser-based scientific image visualization for Angular — OpenSeadragon (WSI), Plotly (2D/3D) and napari-js (WebGPU) rendering, region/annotation editing, and in-browser SAM segmentation. Extracted from jit-ui #80.
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- ontology-annotation-network Public
A rest-api to serve a neo4j database of supported ontology annotations.
- rit-imageanalysis-containers Public
Making it easier for users to spin up a Singularity container with image analysis tools from a slurm-based cluster
- geneweaver Public
- 5baseTAPS Public
JAX-GT Nextflow DSL2 pipeline for whole-genome 5mC methylation and SNP detection via Illumina 5-base/TAPS chemistry, built on duplex UMI consensus sequencing (fgbio + bwa-mem2 + rastair + GATK HaplotypeCaller). An open-source DRAGEN 5-base WGS alternative.
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