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1. spotsweeper_py spotsweeper_py Public

   SpotSweeper-py: Python version of SpotSweeper package

   Python 11

2. scDNA-homozygous-deletions scDNA-homozygous-deletions Public

   Developing and benchmarking a deletion-specific scan statistic for detecting focal homozygous deletions in sparse single-cell DNA sequencing data.

   Jupyter Notebook

3. scRNA-cross-donor-generalization scRNA-cross-donor-generalization Public

   scRNA-seq cell type classification benchmark showing that random cell-level splits inflate performance due to donor-level leakage

   Jupyter Notebook 1

4. visiumhd_utils visiumhd_utils Public

   Visium HD Pre-processing and Utils Package

   Python

5. hicks-lab-personal hicks-lab-personal Public

   Coding tutorials and scripts, affiliated with Hicks Lab.

   Jupyter Notebook

6. danielchen05.github.io danielchen05.github.io Public

   Personal Website

   HTML