Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
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Updated
Aug 21, 2026
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Non-parametric density inference for single-cell analysis.
Code and data accompanying "A live-cell image-based machine learning strategy for reducing variability in PSC differentiation systems", Cell Discov 9, 53 (2023).
Snapshot: a model-free method for clustering and visualizing epigenomic data
This repository contains the code used for the project "Stochastic modeling of clonal memory effects on population growth of dividing and differentiating cells".
Can a cellular neural network learn how to reliably express meaningful patterns? This is a toy model for a gene regulatory network for cell specification.
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