PhD in Bioinformatics | Creator of The Omics Hub | Specializing in single-cell transcriptomics, tumor microenvironment immunology, and scalable bioinformatics pipelines.
I am a Computational Biologist dedicated to bridging the gap between raw sequencing data and actionable biological insights. Recently completing my PhD at the Université de Bordeaux / CNRS, my research focuses on resolving cellular heterogeneity in Sézary Syndrome using advanced single-cell multi-omics (scRNA-seq, scATAC-seq, CITE-seq).
- 🔭 Currently working on: Publishing high-impact findings on the malignant states and metabolic vulnerabilities of Sézary Syndrome.
- 🔭 My toolkit: R, Python, Seurat, Scanpy, Bash, Slurm HPC, Nextflow, and Snakemake.
- 👬 I'm looking to collaborate on: Spatial transcriptomics, immune repertoire tracking, and translational bioinformatics projects.
- 🎓 Creator of: The Omics Hub, an extensive, free tutorial platform for mastering HPC and scRNA-seq workflows.
- OmicsFlow-scRNAseq: A production-ready, highly parameterized pipeline for end-to-end single-cell RNA-seq processing on HPC clusters.
- OmicsFlow-BulkRNAseq: A robust bulk RNA-seq workflow utilizing FastQC, HISAT2, and featureCounts.
- The Omics Hub (Repo): The codebase for my educational portal covering command-line basics, Conda environment management, and advanced trajectory inference.
"Transforming data into discovery."