This repository contains the source code for my professional academic portfolio and curriculum vitae, hosted at nmabbasi.github.io.
The site serves as a comprehensive overview of my academic and professional journey as a Computational Biologist, specializing in single-cell transcriptomics and tumor microenvironment immunology.
It provides detailed information on:
- Education: PhD in Bioinformatics (Université de Bordeaux / CNRS), MSc, and BSc backgrounds.
- Research Experience: Detailed breakdown of my PhD research on Sézary Syndrome, including single-cell multi-omics integration (scRNA-seq, scATAC-seq, CITE-seq), as well as previous roles as a Bioinformatics Research Assistant.
- Technical Skills: Command of computational languages (R, Python, Bash), pipeline orchestration (Nextflow, Snakemake), and advanced analytical frameworks (Seurat, Scanpy).
- Publications & Projects: Links to peer-reviewed publications and flagship open-source repositories like The Omics Hub and the OmicsFlow Pipelines.
This is a static site natively hosted and deployed via GitHub Pages.
- It utilizes a clean, professional, academic-focused design template.
- Styled heavily with custom CSS to ensure a premium, responsive, and readable experience across all devices.
- Uses
_includesand layout partials (via Jekyll) for scalable component management.
- Portfolio: nmabbasi.github.io
- LinkedIn: Nasir Mahmood Abbasi
- Educational Platform: The Omics Hub
Feel free to explore the repository or reach out if you're interested in collaborations surrounding spatial transcriptomics or scalable bioinformatics pipelines!